Henrik,
re: If not, how is this new process to auto-refresh feature meant to be used?
I had some communication with support recently that if you are on page x (something other than page 1) of a query and apply a filter, the query's auto-refresh only refreshes that page, so it looks like there are no items in the newly filtered results.
So, support added the ability to not trigger a running of the query upon auto-refresh. This will force the query to re-display form page 1 & show all of the newly filtered results properly.
I have not tested the new functionality yet, but that was one of the intents.